Peccarelli, M., Scott, T.D., Kebaara, B.W., 2019. Nonsense-mediated mRNA decay of the ferric and cupric reductase mRNAs FRE1 and FRE2 in Saccharomyces cerevisiae. FEBS Letters 593, 3228–3238. https://doi.org/10.1002/1873-3468.13545

Murtha, K., Hwang, M., Peccarelli, M.C., Scott, T.D., Kebaara, B.W., 2019. The nonsense-mediated mRNA decay (NMD) pathway differentially regulates COX17, COX19 and COX23 mRNAs. Curr Genet 65, 507–521. https://doi.org/10.1007/s00294-018-0892-y

Peccarelli, M., Scott, T.D., Steele, M., Kebaara, B.W., 2016. mRNAs involved in copper homeostasis are regulated by the nonsense-mediated mRNA decay pathway depending on environmental conditions. Fungal Genetics and Biology 86, 81–90. https://doi.org/10.1016/j.fgb.2015.12.011

Obenoskey, J., Lane, D.R., Atkin, A.L., Kebaara, B.W., 2014. Immunity of the Saccharomyces cerevisiae SSY5 mRNA to nonsense-mediated mRNA decay. Front. Mol. Biosci. 1. https://doi.org/10.3389/fmolb.2014.00025

Peccarelli, M., Kebaara, B.W., 2014a. Measurement of mRNA Decay Rates in Saccharomyces cerevisiae Using rpb1-1 Strains. JoVE (Journal of Visualized Experiments) e52240. https://doi.org/10.3791/52240

Peccarelli, M., Kebaara, B.W., 2014b. Regulation of Natural mRNAs by the Nonsense-Mediated mRNA Decay Pathway. Eukaryotic Cell 13, 1126–1135. https://doi.org/10.1128/EC.00090-14

Peccarelli, M., Scott, T.D., Wong, H., Wang, X., Kebaara, B.W., 2014. Regulation of CTR2 mRNA by the nonsense-mediated mRNA decay pathway. Biochimica et Biophysica Acta (BBA) – Gene Regulatory Mechanisms 1839, 1283–1294. https://doi.org/10.1016/j.bbagrm.2014.09.011

Wang, X., Okonkwo, O., Kebaara, B.W., 2013. Physiological basis of copper tolerance of Saccharomyces cerevisiae nonsense-mediated mRNA decay mutants. Yeast 30, 179–190. https://doi.org/10.1002/yea.2950

Kebaara, B.W., Baker, K.E., Patefield, K.D., Atkin, A.L., 2012. Analysis of Nonsense-Mediated mRNA Decay in Saccharomyces cerevisiae. Current Protocols in Cell Biology 54, 27.3.1-27.3.39. https://doi.org/10.1002/0471143030.cb2703s54

Deliz-Aguirre, R., Atkin, A.L., Kebaara, B.W., 2011. Copper tolerance of Saccharomyces cerevisiae nonsense-mediated mRNA decay mutants. Curr Genet 57, 421–430. https://doi.org/10.1007/s00294-011-0356-0

Kebaara, B.W., Atkin, A.L., 2009. Long 3′-UTRs target wild-type mRNAs for nonsense-mediated mRNA decay in Saccharomyces cerevisiae. Nucleic Acids Res 37, 2771–2778. https://doi.org/10.1093/nar/gkp146

Ghosh, S., Kebaara, B.W., Atkin, A.L., Nickerson, K.W., 2008. Regulation of Aromatic Alcohol Production in Candida albicans. Appl. Environ. Microbiol. 74, 7211–7218. https://doi.org/10.1128/AEM.01614-08

Kebaara, B.W., Langford, M.L., Navarathna, D.H.M.L.P., Dumitru, R., Nickerson, K.W., Atkin, A.L., 2008. Candida albicans Tup1 Is Involved in Farnesol-Mediated Inhibition of Filamentous-Growth Induction. Eukaryotic Cell 7, 980–987. https://doi.org/10.1128/EC.00357-07

Nazarenus, T., Cedarberg, R., Bell, R., Cheatle, J., Forch, A., Haifley, A., Hou, A., Wanja Kebaara, B., Shields, C., Stoysich, K., Taylor, R., Atkin, A.L., 2005. Upf1p, a highly conserved protein required for nonsense-mediated mRNA decay, interacts with the nuclear pore proteins Nup100p and Nup116p. Gene 345, 199–212. https://doi.org/10.1016/j.gene.2004.10.005

Hornby, J.M., Kebaara, B.W., Nickerson, K.W., 2003. Farnesol Biosynthesis in Candida albicans: Cellular Response to Sterol Inhibition by Zaragozic Acid B. Antimicrobial Agents and Chemotherapy 47, 2366–2369. https://doi.org/10.1128/AAC.47.7.2366-2369.2003

Kebaara, Bessie, Nazarenus, T., Taylor, R., Atkin, A.L., 2003. Genetic background affects relative nonsense mRNA accumulation in wild-type and upf mutant yeast strains. Curr Genet 43, 171–177. https://doi.org/10.1007/s00294-003-0386-3

Kebaara, B., Nazarenus, T., Taylor, R., Forch, A., Atkin, A.L., 2003a. The Upf‐dependent decay of wild‐type PPR1 mRNA depends on its 5′‐UTR and first 92 ORF nucleotides. Nucleic Acids Res 31, 3157–3165. https://doi.org/10.1093/nar/gkg430

Kebaara, B., Nazarenus, T., Taylor, R., Forch, A., Atkin, A.L., 2003b. The Upf-dependent decay of wild-type PPR1 mRNA depends on its 5′-UTR and first 92 ORF nucleotides. Nucleic Acids Res 31, 3157–3165.

Wang, X., Okonkwo, O., Kebaara, B.W., 2013. Physiological basis of copper tolerance of Saccharomyces cerevisiae nonsense-mediated mRNA decay mutants. Yeast 30, 179–190. https://doi.org/10.1002/yea.2950